GitHub Advisoryadvisory · PyPI
GHSA-j35x-w4gj-pf7w Open Babel has heap buffer overflow in SMILES OBSmilesParser::ParseSmiles
HIGH
Official page ↗
- Aliases
- CVE-2025-10996
- Ecosystem
- PyPI
- Packages
- openbabel
- Severity
- High
- CVSS vector
- CVSS:3.1/AV:L/AC:L/PR:N/UI:R/S:U/C:H/I:H/A:H
- Weaknesses
- CWE-119
- Reviewed
- 2026-06-30
Affected packages
• PyPI openbabel: < 3.2.0 → fixed in 3.2.0
Description
Summary
A memory-safety vulnerability in Open Babel's SMILES parser caused a
heap buffer overflow when reading a crafted input string.
Details
The flaw was in `OBSmilesParser::ParseSmiles`. A malformed SMILES
input caused the parser to write past the end of a heap-allocated
buffer.
Impact
Open Babel is a C++ library and CLI used to read and write chemistry
file formats; it is shipped by Linux distributions and embedded in
services that may parse untrusted input. Triggering this vulnerability
requires the victim to parse a malicious SMILES string with the
`obabel` tool, the `OBConversion` API, or any of the language
bindings (Python, Ruby, Java, R, Perl, C#, PHP). SMILES strings are
commonly passed on the command line and through scripted pipelines,
so this primitive is especially reachable.
Affected versions
All releases up to and including 3.1.1.
Patched version
3.2.0 (released 2026-05-26).
Patch
Fix commit: https://github.com/openbabel/openbabel/commit/b34cd604
Originally reported as #2831; fixes consolidated in #2913.
A minimized reproducer for this CVE is checked in under
`test/files/fuzz_regress/` and is exercised on every CI build under
ASAN+UBSAN by the `fuzzregresstest` harness.
Credit
Reported via OSS-Fuzz.
Related
Alias · CVE (1)
- CVE-2025-10996 A vulnerability was detected in Open Babel up to 3.1.1. vulnerability
Weakness · CWE (1)
- CWE-119 Improper Restriction of Operations within the Bounds of a Memory Buffer weakness
References
- https://github.com/openbabel/openbabel/security/advisories/GHSA-j35x-w4gj-pf7w web
- https://nvd.nist.gov/vuln/detail/CVE-2025-10996 advisory
- https://github.com/openbabel/openbabel/issues/2831 web
- https://github.com/openbabel/openbabel/pull/2913 web
- https://github.com/openbabel/openbabel/commit/b34cd604 web
- https://github.com/openbabel/openbabel package
- https://github.com/user-attachments/files/22318556/poc.zip web
- https://vuldb.com/?ctiid.325924 web
- https://vuldb.com/?id.325924 web
- https://vuldb.com/?submit.654060 web