GitHub Advisoryadvisory · PyPI
GHSA-m982-7q3h-r784 Open Babel has out-of-bounds read in PQS lowerit (pre-buffer read)
MEDIUM
Official page ↗
- Aliases
- CVE-2025-11000
- Ecosystem
- PyPI
- Packages
- openbabel
- Severity
- Moderate
- CVSS vector
- CVSS:3.1/AV:L/AC:L/PR:N/UI:R/S:U/C:L/I:N/A:L
- Weaknesses
- CWE-125, CWE-404
- Reviewed
- 2026-07-01
Affected packages
• PyPI openbabel: < 3.2.0 → fixed in 3.2.0
Description
Summary
A memory-safety vulnerability in Open Babel's PQS parser caused an
out-of-bounds (pre-buffer) read when reading a crafted input file.
Details
The flaw was in the `lowerit` helper used by the PQS parser. A
malformed input caused the helper to read one or more bytes before
the start of its input buffer.
Impact
Open Babel is a C++ library and CLI used to read and write chemistry
file formats; it is shipped by Linux distributions and embedded in
services that may parse untrusted input. Triggering this vulnerability
requires the victim to open a malicious PQS file with the `obabel`
tool, the `OBConversion` API, or any of the language bindings (Python,
Ruby, Java, R, Perl, C#, PHP).
Affected versions
All releases up to and including 3.1.1.
Patched version
3.2.0 (released 2026-05-26).
Patch
Fix commit: https://github.com/openbabel/openbabel/commit/f4a5ebae
Fixes consolidated in #2913.
A minimized reproducer for this CVE is checked in under
`test/files/fuzz_regress/` and is exercised on every CI build under
ASAN+UBSAN by the `fuzzregresstest` harness.
Credit
Reported via OSS-Fuzz.
Related
Alias · CVE (1)
- CVE-2025-11000 A vulnerability was determined in Open Babel up to 3.1.1. vulnerability
References
- https://github.com/openbabel/openbabel/security/advisories/GHSA-m982-7q3h-r784 web
- https://nvd.nist.gov/vuln/detail/CVE-2025-11000 advisory
- https://github.com/openbabel/openbabel/issues/2826 web
- https://github.com/openbabel/openbabel/commit/f4a5ebae web
- https://github.com/openbabel/openbabel package
- https://github.com/user-attachments/files/22318474/poc.zip web
- https://vuldb.com/?ctiid.325928 web
- https://vuldb.com/?id.325928 web
- https://vuldb.com/?submit.654066 web