GitHub Advisoryadvisory · PyPI
GHSA-rxpr-wq63-jr7p Open Babel has a NULL pointer dereference in CDXML OBAtom::GetExplicitValence
LOW
Official page ↗
- Aliases
- CVE-2026-3408
- Ecosystem
- PyPI
- Packages
- openbabel
- Severity
- Low
- CVSS vector
- CVSS:3.1/AV:L/AC:L/PR:N/UI:R/S:U/C:N/I:N/A:H
- Weaknesses
- CWE-476
- Reviewed
- 2026-06-30
Affected packages
• PyPI openbabel: < 3.2.0 → fixed in 3.2.0
Description
Summary
A memory-safety vulnerability in Open Babel's CDXML file format parser
caused a NULL pointer dereference when reading a crafted input file.
Details
The flaw was in `OBAtom::GetExplicitValence` as called from the CDXML
parser. A malformed fragment caused the parser to invoke the method
on a NULL atom pointer.
Impact
Open Babel is a C++ library and CLI used to read and write chemistry
file formats; it is shipped by Linux distributions and embedded in
services that may parse untrusted input. Triggering this vulnerability
requires the victim to open a malicious CDXML file with the `obabel`
tool, the `OBConversion` API, or any of the language bindings (Python,
Ruby, Java, R, Perl, C#, PHP).
Affected versions
All releases up to and including 3.1.1.
Patched version
3.2.0 (released 2026-05-26).
Patch
Fix commit: https://github.com/openbabel/openbabel/commit/e23a224b
Tracked in #2862.
A minimized reproducer for this CVE is checked in under
`test/files/fuzz_regress/` and is exercised on every CI build under
ASAN+UBSAN by the `fuzzregresstest` harness.
Credit
Reported by Vedant Madane (@VedantMadane) via VulDB.
Related
Alias · CVE (1)
- CVE-2026-3408 A vulnerability was identified in Open Babel up to 3.1.1. vulnerability
Weakness · CWE (1)
- CWE-476 NULL Pointer Dereference weakness
References
- https://github.com/openbabel/openbabel/security/advisories/GHSA-rxpr-wq63-jr7p web
- https://nvd.nist.gov/vuln/detail/CVE-2026-3408 advisory
- https://github.com/openbabel/openbabel/issues/2848 web
- https://github.com/openbabel/openbabel/pull/2862 web
- https://github.com/VedantMadane/openbabel/commit/e23a224b8fd9d7c2a7cde9ef4ec6afb4c05aa08a web
- https://github.com/oneafter/0128/blob/main/ob3/repro.cdxml web
- https://github.com/openbabel/openbabel package
- https://vuldb.com/?ctiid.348303 web
- https://vuldb.com/?id.348303 web
- https://vuldb.com/?submit.763756 web