GitHub Advisoryadvisory · PyPI

GHSA-rxpr-wq63-jr7p Open Babel has a NULL pointer dereference in CDXML OBAtom::GetExplicitValence

LOW Published 2026-06-30 Modified 2026-06-30 Official page ↗
Aliases
CVE-2026-3408
Ecosystem
PyPI
Packages
openbabel
Severity
Low
CVSS vector
CVSS:3.1/AV:L/AC:L/PR:N/UI:R/S:U/C:N/I:N/A:H
Weaknesses
CWE-476
Reviewed
2026-06-30

Affected packages

• PyPI openbabel: < 3.2.0 → fixed in 3.2.0

Description

Summary A memory-safety vulnerability in Open Babel's CDXML file format parser caused a NULL pointer dereference when reading a crafted input file. Details The flaw was in `OBAtom::GetExplicitValence` as called from the CDXML parser. A malformed fragment caused the parser to invoke the method on a NULL atom pointer. Impact Open Babel is a C++ library and CLI used to read and write chemistry file formats; it is shipped by Linux distributions and embedded in services that may parse untrusted input. Triggering this vulnerability requires the victim to open a malicious CDXML file with the `obabel` tool, the `OBConversion` API, or any of the language bindings (Python, Ruby, Java, R, Perl, C#, PHP). Affected versions All releases up to and including 3.1.1. Patched version 3.2.0 (released 2026-05-26). Patch Fix commit: https://github.com/openbabel/openbabel/commit/e23a224b Tracked in #2862. A minimized reproducer for this CVE is checked in under `test/files/fuzz_regress/` and is exercised on every CI build under ASAN+UBSAN by the `fuzzregresstest` harness. Credit Reported by Vedant Madane (@VedantMadane) via VulDB.

Related

Alias · CVE (1)

  • CVE-2026-3408 A vulnerability was identified in Open Babel up to 3.1.1. vulnerability

Weakness · CWE (1)

  • CWE-476 NULL Pointer Dereference weakness

References